package core.utils;

/*Author: John Archer, Contact: john.archer.jpa@gmail.com*/
public class EPara {
    public static int POSTFILT = 0;
    public static int MIN_COV_CON = 5;
    public static int MIN_FREQ_HIGHLIGHT = 0;
    public static int HPS_LENGTH = 10;
    public static int KMER_LEN = 8;
    public static int KMER_DENS = 2;
    public static int WORD_SKIP = 1;
    public static int MAT = 1;
    public static int GO = -4;
    public static int GE = -1;
    public static int MIS = -1;
    public static int MIN_R_LEN = 30;
    public static int MAX_R_LEN = 550;
    public static int MAXINDEL = 6;
    public static int THREADS = (Runtime.getRuntime().availableProcessors()>2)?(Runtime.getRuntime().availableProcessors()-2):1;
    public static int [] HPS_LOCATIONS;
}